For A. thaliana, converts TAIR IDs to entrez IDs, gene symbol or description

Source: R/fct_go.R

For A. thaliana, converts TAIR IDs to entrez IDs, gene symbol or description

convert_from_agi(ids, to = "entrez")

Arguments

ids

vector of AGI gene IDs

to

value in c("entrez", "symbol", "name")

Value

named vector

Examples

genes <- c("AT2G05940", "AT4G16480", "AT4G04570", "AT2G30130", "AT1G56300")
entrez_ids <- convert_from_agi(genes)
#> 
print(entrez_ids)
#> AT2G05940 AT4G16480 AT4G04570 AT2G30130 AT1G56300 
#>  "815147"  "827346"  "825789"  "817565"  "842083" 
symbols <- convert_from_agi(genes, to = "symbol")
print(symbols)
#> AT2G059401 AT2G059402 AT4G164801 AT4G164802  AT4G04570 AT2G301301 AT2G301302 
#>    "PBL14"     "RIPK"   "ATINT4"     "INT4"    "CRK40"     "ASL5"    "LBD12" 
#> AT2G301303  AT1G56300 
#>     "PCK1"    "DjC53"