Gene annotations for supported organisms in DIANE

Source: R/gene_annotations.R

For each gene identifier, are provided its common name and description.

gene_annotations

Format

A named list with the following elements:

Arabidopsis thaliana

Dataframe with AGI terms as rownames, and two columns : description and name.

Oryza sativa rapdb

Dataframe with IDs as rownames, and two columns : description and label

Source

For Arabidopsis thaliana

http://bioconductor.org/packages/release/data/annotation/html/org.At.tair.db.html TAIR10 via the bioconductor package org.At.tair.db

Examples

{
 print(head(gene_annotations[["Arabidopsis thaliana"]]))
}
#>               label                                                 description
#> AT3G53400 AT3G53400                                    peptide upstream protein
#> AT4G30540 AT4G30540 Class I glutamine amidotransferase-like superfamily protein
#> AT2G28580 AT2G28580                    transmembrane protein, putative (DUF247)
#> AT5G35240 AT5G35240                                   transposable_element_gene
#> AT2G15640 AT2G15640                                        F-box family protein
#> AT4G10470 AT4G10470                                        hypothetical protein