Gives gene information (common name and description) for a specific organism
get_gene_information(ids, organism)vector of genes, AGI for Arabidopsis and ensembl for Human
value must be between "Arabidopsis thaliana", "Homo sapiens", "Mus musculus", "Caenorhabditis elegans", "Escherichia coli", "Drosophilia melanogaster"
Dataframe with input genes as rownames, with their label and description as columns
genes <- c("AT2G05940", "AT4G16480", "AT4G04570", "AT2G30130", "AT1G56300")
get_gene_information(genes, organism = "Arabidopsis thaliana")
#> label
#> AT2G05940 RIPK
#> AT4G16480 INT4
#> AT4G04570 RECEPTOR-LIKE PROTEIN KINASE
#> AT2G30130 ASL5
#> AT1G56300 DJC53
#> description
#> AT2G05940 Encodes a receptor-like cytoplasmic kinase that phosphorylates the host target RIN4, leading to the activation of a plant innate immune receptor RPM1.
#> AT4G16480 Encodes a high affinity H+:<i>myo</i>-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of <i>myo</i>-inositol. The mRNA is cell-to-cell mobile.
#> AT4G04570 Encodes a cysteine-rich receptor-like protein kinase. The mRNA is cell-to-cell mobile.
#> AT2G30130 Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.
#> AT1G56300 Chaperone DnaJ-domain superfamily protein
get_gene_information(c("WBGene00000013", "WBGene00000035"),
organism = "Caenorhabditis elegans")
#> label description
#> WBGene00000013 abf-2 Antibacterial factor-related peptide 2
#> WBGene00000035 ace-1 Acetylcholinesterase 1