Draw raw pvalue histogram

Source: R/fct_dea.R

Draw raw pvalue histogram

draw_raw_pvalue_histogram(tags, bins = 100, lfc = 0)

Arguments

tags

returned by estimateDEGs, function, that is to say topTags from edgeR, used with p.value = 1

bins

number of bar to display. Default is 100.

lfc

absolute log fold change threshold for differentially expressed genes, default is 0.

Value

ggplot object corresponding to raw pvalue histogram.

Examples

data("abiotic_stresses")
tcc_object <- DIANE::normalize(abiotic_stresses$raw_counts, abiotic_stresses$conditions, 
iteration = FALSE)
tcc_object <- DIANE::filter_low_counts(tcc_object, 10*length(abiotic_stresses$conditions))
fit <- DIANE::estimateDispersion(tcc = tcc_object, conditions = abiotic_stresses$conditions)
tags <- DIANE::estimateDEGs(fit, reference = "C", perturbation = "H", p.value = 1)
DIANE::draw_raw_pvalue_histogram(tags, bins=100, lfc = 0)
#> Error: 'draw_raw_pvalue_histogram' is not an exported object from 'namespace:DIANE'